@article {3395, title = {Adaptive spatio-temporal filtering for movement related potentials in EEG-based brain-computer interfaces.}, journal = {IEEE Trans Neural Syst Rehabil Eng}, volume = {22}, year = {2014}, month = {07/2014}, pages = {847-57}, abstract = {Movement related potentials (MRPs) are used as features in many brain-computer interfaces (BCIs) based on electroencephalogram (EEG). MRP feature extraction is challenging since EEG is noisy and varies between subjects. Previous studies used spatial and spatio-temporal filtering methods to deal with these problems. However, they did not optimize temporal information or may have been susceptible to overfitting when training data are limited and the feature space is of high dimension. Furthermore, most of these studies manually select data windows and low-pass frequencies. We propose an adaptive spatio-temporal (AST) filtering method to model MRPs more accurately in lower dimensional space. AST automatically optimizes all parameters by employing a Gaussian kernel to construct a low-pass time-frequency filter and a linear ridge regression (LRR) algorithm to compute a spatial filter. Optimal parameters are simultaneously sought by minimizing leave-one-out cross-validation error through gradient descent. Using four BCI datasets from 12 individuals, we compare the performances of AST filter to two popular methods: the discriminant spatial pattern filter and regularized spatio-temporal filter. The results demonstrate that our AST filter can make more accurate predictions and is computationally feasible.}, keywords = {Algorithms, Artificial Intelligence, brain-computer interfaces, Data Interpretation, Statistical, Electroencephalography, Evoked Potentials, Motor, Humans, Imagination, Motor Cortex, Movement, Pattern Recognition, Automated, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, Computer-Assisted, Spatio-Temporal Analysis}, issn = {1558-0210}, doi = {10.1109/TNSRE.2014.2315717}, url = {http://www.ncbi.nlm.nih.gov/pubmed/24723632}, author = {Lu, Jun and Xie, Kan and Dennis J. McFarland} } @proceedings {2241, title = {Detection of spontaneous class-specific visual stimuli with high temporal accuracy in human electrocorticography.}, volume = {2009}, year = {2009}, month = {2009}, pages = {6465-8}, abstract = {Most brain-computer interface classification experiments from electrical potential recordings have been focused on the identification of classes of stimuli or behavior where the timing of experimental parameters is known or pre-designated. Real world experience, however, is spontaneous, and to this end we describe an experiment predicting the occurrence, timing, and types of visual stimuli perceived by a human subject from electrocorticographic recordings. All 300 of 300 presented stimuli were correctly detected, with a temporal precision of order 20 ms. The type of stimulus (face/house) was correctly identified in 95\% of these cases. There were approximately 20 false alarm events, corresponding to a late 2nd neuronal response to a previously identified event.}, keywords = {Algorithms, Electrocardiography, Evoked Potentials, Visual, Humans, Male, Pattern Recognition, Automated, Pattern Recognition, Visual, Photic Stimulation, Reproducibility of Results, Sensitivity and Specificity, User-Computer Interface, Visual Cortex}, issn = {1557-170X}, doi = {10.1109/IEMBS.2009.5333546}, author = {Miller, John W and Hermes, Dora and Gerwin Schalk and Ramsey, Nick F and Jagadeesh, Bharathi and den Nijs, Marcel and Ojemann, J G and Rao, Rajesh P N} } @article {2136, title = {Overlap and refractory effects in a brain-computer interface speller based on the visual P300 event-related potential.}, journal = {J Neural Eng}, volume = {6}, year = {2009}, month = {04/2009}, pages = {026003}, abstract = {

We reveal the presence of refractory and overlap effects in the event-related potentials in visual P300 speller datasets, and we show their negative impact on the performance of the system. This finding has important implications for how to encode the letters that can be selected for communication. However, we show that such effects are dependent on stimulus parameters: an alternative stimulus type based on apparent motion suffers less from the refractory effects and leads to an improved letter prediction performance.

}, keywords = {Algorithms, Brain, Cognition, Computer Simulation, Electroencephalography, Event-Related Potentials, P300, Humans, Models, Neurological, Pattern Recognition, Automated, Photic Stimulation, Semantics, Signal Processing, Computer-Assisted, Task Performance and Analysis, User-Computer Interface, Writing}, issn = {1741-2552}, doi = {10.1088/1741-2560/6/2/026003}, url = {http://www.ncbi.nlm.nih.gov/pubmed/19255462}, author = {Martens, S M M and Jeremy Jeremy Hill and Farquhar, Jason and Sch{\"o}lkopf, B} } @article {2845, title = {Seizure prediction for epilepsy using a multi-stage phase synchrony based system.}, journal = {Conf Proc IEEE Eng Med Biol Soc}, volume = {2009}, year = {2009}, month = {09/2009}, pages = {25-8}, abstract = {Seizure onset prediction in epilepsy is a challenge which is under investigation using many and varied signal processing techniques. Here we present a multi-stage phase synchrony based system that brings to bear the advantages of many techniques in each substage. The 1(st) stage of the system unmixes continuous long-term (2-4 days) multichannel scalp EEG using spatially constrained Independent Component Analysis and estimates the long term significant phase synchrony dynamics of narrowband (2-8 Hz and 8-14 Hz) seizure components. It then projects multidimensional features onto a 2-D map using Neuroscale and evaluates the probability of predictive events using Gaussian Mixture Models. We show the possibility of seizure onset prediction within a prediction window of 35-65 minutes with a sensitivity of 65-100\% and specificity of 65-80\% across epileptic patients.}, keywords = {Algorithms, Artificial Intelligence, Diagnosis, Computer-Assisted, Electroencephalography, Epilepsy, Humans, Pattern Recognition, Automated, Reproducibility of Results, Sensitivity and Specificity}, issn = {1557-170X}, doi = {10.1109/IEMBS.2009.5334898}, url = {http://www.ncbi.nlm.nih.gov/pubmed/19965104}, author = {Christopher J James and Disha Gupta} } @article {2187, title = {Real-time detection of event-related brain activity.}, journal = {Neuroimage}, volume = {43}, year = {2008}, month = {11/2008}, pages = {245-9}, abstract = {

The complexity and inter-individual variation of\ brain\ signals impedes real-time detection of events in raw signals. To convert these complex signals into results that can be readily understood, current approaches usually apply statistical methods to data from known conditions after all data have been collected. The capability to provide meaningful visualization of complex\ brain\ signals without the requirement to initially collect data from all conditions would provide a new tool, essentially a new imaging technique, that would open up new avenues for the study of\ brain\ function. Here we show that a new analysis approach, called SIGFRIED, can overcome this serious limitation of current methods. SIGFRIED can visualize\ brain\ signal changes without requiring prior data collection from all conditions. This capacity is particularly well suited to applications in which comprehensive prior data collection is impossible or impractical, such as intraoperative localization of cortical function or detection of epileptic seizures.

}, keywords = {Adult, Algorithms, Brain Mapping, Computer Systems, Diagnosis, Computer-Assisted, Electroencephalography, Epilepsy, Evoked Potentials, Female, Humans, Male, Pattern Recognition, Automated, Reproducibility of Results, Sensitivity and Specificity}, issn = {1095-9572}, doi = {10.1016/j.neuroimage.2008.07.037}, url = {http://www.ncbi.nlm.nih.gov/pubmed/18718544}, author = {Gerwin Schalk and Leuthardt, E C and Peter Brunner and Ojemann, J G and Lester A Gerhardt and Jonathan Wolpaw} } @proceedings {2240, title = {Three cases of feature correlation in an electrocorticographic BCI.}, year = {2008}, month = {2008}, pages = {5318-21}, abstract = {Three human subjects participated in a closed-loop brain computer interface cursor control experiment mediated by implanted subdural electrocorticographic arrays. The paradigm consisted of several stages: baseline recording, hand and tongue motor tasks as the basis for feature selection, two closed-loop one-dimensional feedback experiments with each of these features, and a two-dimensional feedback experiment using both of the features simultaneously. The two selected features were simple channel and frequency band combinations associated with change during hand and tongue movement. Inter-feature correlation and cross-correlation between features during different epochs of each task were quantified for each stage of the experiment. Our anecdotal, three subject, result suggests that while high correlation between horizontal and vertical control signal can initially preclude successful two-dimensional cursor control, a feedback-based learning strategy can be successfully employed by the subject to overcome this limitation and progressively decorrelate these control signals.}, keywords = {Adolescent, Adult, Algorithms, Electrocardiography, Evoked Potentials, Motor, Female, Humans, Male, Middle Aged, Motor Cortex, Pattern Recognition, Automated, Statistics as Topic, Task Performance and Analysis, User-Computer Interface}, issn = {1557-170X}, doi = {10.1109/IEMBS.2008.4650415}, author = {Miller, John W and Blakely, Timothy and Gerwin Schalk and den Nijs, Marcel and Rao, Rajesh P N and Ojemann, J G} } @article {2846, title = {Space-time ICA versus Ensemble ICA for ictal EEG analysis with component differentiation via Lempel-Ziv complexity.}, journal = {Conf Proc IEEE Eng Med Biol Soc}, volume = {08/2007}, year = {2007}, month = {2007}, pages = {5473-6}, abstract = {In this proof-of-principle study we analyzed intracranial electroencephalogram recordings in patients with intractable focal epilepsy. We contrast two implementations of Independent Component Analysis (ICA) - Ensemble (or spatial) ICA (E-ICA) and Space-Time ICA (ST-ICA) in separating out the ictal components underlying the measurements. In each case we assess the outputs of the ICA algorithms by means of a non-linear method known as the Lempel-Ziv (LZ) complexity. LZ complexity quantifies the complexity of a time series and is well suited to the analysis of non-stationary biomedical signals of short length. Our results show that for small numbers of intracranial recordings, standard E-ICA results in marginal improvements in the separation as measured by the LZ complexity changes. ST-ICA using just 2 recording channels both near and far from the epileptic focus result in more distinct ictal components--although at this stage there is a subjective element to the separation process for ST-ICA. Our results are promising showing that it is possible to extract meaningful information from just 2 recording electrodes through ST-ICA, even if they are not directly over the seizure focus. This work is being further expanded for seizure onset analysis.}, keywords = {Algorithms, Artificial Intelligence, Diagnosis, Computer-Assisted, Electroencephalography, Epilepsy, Humans, Pattern Recognition, Automated, Principal Component Analysis, Reproducibility of Results, Sensitivity and Specificity}, issn = {1557-170X}, doi = {10.1109/IEMBS.2007.4353584}, url = {http://www.ncbi.nlm.nih.gov/pubmed/18003250}, author = {Christopher J James and Ab{\'a}solo, Daniel and Disha Gupta} } @article {2174, title = {A {\textmu}-rhythm Matched Filter for Continuous Control of a Brain-Computer Interface.}, journal = {IEEE Trans Biomed Eng}, volume = {54}, year = {2007}, month = {02/2007}, pages = {273-80}, abstract = {

A brain-computer interface (BCI) is a system that provides an alternate nonmuscular communication/control channel for individuals with severe neuromuscular disabilities. With proper training, individuals can learn to modulate the amplitude of specific electroencephalographic (EEG) components (e.g., the 8-12 Hz mu rhythm and 18-26 Hz beta rhythm) over the sensorimotor cortex and use them to control a cursor on a computer screen. Conventional spectral techniques for monitoring the\ continuousamplitude fluctuations fail to capture essential amplitude/phase relationships of the mu and beta rhythms in a compact fashion and, therefore, are suboptimal. By extracting the characteristic mu rhythm for a user, the exact morphology can be characterized and exploited as a matched filter. A simple, parameterized model for the characteristic mu rhythm is proposed and its effectiveness as a matched filter is examined online for a one-dimensional cursor control task. The results suggest that amplitude/phase coupling exists between the mu and beta bands during event-related desynchronization, and that an appropriate matched filter can provide improved performance.

}, keywords = {Algorithms, Cerebral Cortex, Cortical Synchronization, Electroencephalography, Evoked Potentials, Humans, Imagination, Pattern Recognition, Automated, User-Computer Interface}, issn = {0018-9294}, doi = {10.1109/TBME.2006.886661}, url = {http://www.ncbi.nlm.nih.gov/pubmed/17278584}, author = {Krusienski, Dean J and Gerwin Schalk and Dennis J. McFarland and Jonathan Wolpaw} } @article {2143, title = {Classifying EEG and ECoG signals without subject training for fast BCI implementation: comparison of nonparalyzed and completely paralyzed subjects.}, journal = {IEEE Trans Neural Syst Rehabil Eng}, volume = {14}, year = {2006}, month = {06/2006}, pages = {183-6}, abstract = {

We summarize results from a series of related studies that aim to develop a motor-imagery-basedbrain-computer interface\ using a single recording session of electroencephalogram (EEG) or electrocorticogram (ECoG) signals for each subject. We apply the same experimental and analytical methods to 11 nonparalysed subjects (eight EEG, three ECoG), and to five paralyzed subjects (four EEG, one ECoG) who had been unable to communicate for some time. While it was relatively easy to obtain classifiable signals quickly from most of the nonparalyzed subjects, it proved impossible to classify the signals obtained from the paralyzed patients by the same methods. This highlights the fact that though certain BCI paradigms may work well with healthy subjects, this does not necessarily indicate success with the target user group. We outline possible reasons for this failure to transfer.

}, keywords = {Algorithms, Artificial Intelligence, Cluster Analysis, Computer User Training, Electroencephalography, Evoked Potentials, Female, Humans, Imagination, Male, Middle Aged, Paralysis, Pattern Recognition, Automated, User-Computer Interface}, issn = {1534-4320}, doi = {10.1109/TNSRE.2006.875548}, url = {http://www.ncbi.nlm.nih.gov/pubmed/16792289}, author = {Jeremy Jeremy Hill and Lal, T.N and Schr{\"o}der, Michael and Hinterberger, T. and Wilhelm, Barbara and Nijboer, F and Mochty, Ursula and Widman, Guido and Elger, Christian and Sch{\"o}lkopf, B and K{\"u}bler, A. and Niels Birbaumer} } @article {2153, title = {Multi-channel linear descriptors for event-related EEG collected in brain computer interface.}, journal = {J Neural Eng}, volume = {3}, year = {2006}, month = {03/2006}, pages = {52-8}, abstract = {

By three multi-channel linear descriptors, i.e. spatial\ complexity\ (omega), field power (sigma) and frequency of field changes (phi),\ event-relatedEEGdata\ within 8-30 Hz were investigated during imagination of left or right hand movement. Studies on the\ event-relatedEEGdata\ indicate that a two-channel version of omega, sigma and phi could reflect the antagonistic ERD/ERS patterns over contralateral and ipsilateral areas and also characterize different phases of the changing brain states in the\ event-related\ paradigm. Based on the selective two-channel linear descriptors, the left and right hand motor imagery tasks are classified to obtain satisfactory results, which testify the validity of the three linear descriptors omega, sigma and phi for characterizing\ event-relatedEEG. The preliminary results show that omega, sigma together with phi have good separability for left and right hand motor imagery tasks, which could be considered for classification of two classes of\ EEG\ patterns in the application of brain computer interfaces.

}, keywords = {Algorithms, Electroencephalography, Evoked Potentials, Motor, Humans, Imagination, Motor Cortex, Movement, Pattern Recognition, Automated, Reproducibility of Results, Sensitivity and Specificity, User-Computer Interface}, issn = {1741-2560}, doi = {10.1088/1741-2560/3/1/006}, url = {http://www.ncbi.nlm.nih.gov/pubmed/16510942}, author = {Pei, Xiao-Mei and Zheng, Shi Dong and Xu, Jin and Bin, Guang-yu and Zuoguan Wang} } @article {2116, title = {A binary segmentation approach for boxing ribosome particles in cryo EM micrographs.}, journal = {J Struct Biol}, volume = {145}, year = {2004}, month = {01/2004}, pages = {142-51}, abstract = {

Three-dimensional reconstruction of ribosome particles from electron micrographs requires selection of many single-particle images. Roughly 100,000 particles are required to achieve approximately 10 A resolution. Manual selection of particles, by visual observation of the micrographs on a\ computer\ screen, is recognized as a bottleneck in automated single-particle reconstruction. This paper describes an efficient approach for automated boxing of ribosome particles in micrographs. Use of a fast, anisotropic non-linear reaction-diffusion method to pre-process micrographs and rank-leveling to enhance the contrast between particles and the background, followed by binary and morphological segmentation constitute the core of this technique. Modifying the shape of the particles to facilitate segmentation of individual particles within clusters and boxing the isolated particles is successfully attempted. Tests on a limited number of micrographs have shown that over 80\% success is achieved in automatic particle picking.

}, keywords = {Algorithms, Anisotropy, Automatic Data Processing, Cryoelectron Microscopy, Image Enhancement, Image Processing, Computer-Assisted, Particle Size, Pattern Recognition, Automated, Ribosomes, Software Design}, issn = {1047-8477}, doi = {10.1016/j.jsb.2003.10.026}, url = {http://www.ncbi.nlm.nih.gov/pubmed/15065681}, author = {Adiga, Umesh and Malladi, Ravi and Baxter, Bill and Glaeser, Robert M} }